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| Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
15/03/2023 |
Actualizado : |
15/03/2023 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
LONDOÑO-GIL, M.; CARDONA-CIFUENTES, D.; ESPIGOLAN, R.; PERIPOLLI, E.; LÔBO, R. B.; PEREIRA, A. S. C.; AGUILAR, I.; BALDI, F. |
Afiliación : |
MARISOL LONDOÑO-GIL, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; DANIEL CARDONA-CIFUENTES, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; RAFAEL ESPIGOLAN, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo, Av. Duque de Caxias Norte, 225m Campus Fernando Costa – USP, CEP, SP, Pirassununga, 13635-900, Brazil; ELISA PERIPOLLI, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; RAYSILDO B. LÔBO, Associação Nacional de Criadores e Pesquisadores (ANCP), Rua João Godoy, 463, Jardim América, CEP, SP, Ribeirão Preto, 14020-230, Brazil; ANGÉLICA S. C. PEREIRA, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, Av. Duque de Caxias Norte, 225 Campus Fernando Costa Jardim Elite, CEP, SP, Pirassununga, 13635-900, Brazil; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BALDI, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo, Av. Duque de Caxias Norte, 225m Campus Fernando Costa – USP, CEP, SP, Pirassununga, 13635-900, Brazil. |
Título : |
Genomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle. |
Fecha de publicación : |
2023 |
Fuente / Imprenta : |
Tropical Animal Health and Production, 2023, Volume 55, Issue 2, Article 95. doi: https://doi.org/10.1007/s11250-023-03508-4 |
ISSN : |
0049-4747 |
DOI : |
10.1007/s11250-023-03508-4 |
Idioma : |
Inglés |
Notas : |
Article history: Received 28 April 2022, Accepted 11 February 2023, To be Published April 2023. -- Correspondence author: Cardona-Cifuentes, D.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, Brazil; email:daniel.cardona@unesp.br -- FUNDING: This work was supported by the São Paulo Research Foundation, FAPESP (grant number 2016/22751-6). -- Publisher: Springer Science and Business Media B.V. -- |
Contenido : |
The aim of this work was to evaluate the impact of applying genomic information in pedigree uncertainty situations on genetic evaluations for growth- and cow productivity-related traits in Nelore commercial herds. Records for accumulated cow productivity (ACP) and adjusted weight at 450 days of age (W450) were used, as well as genotypes of registered and commercial herd animals, genotyped with the Clarifide Nelore 3.1 panel (~29,000 SNPs). The genetic values for commercial and registered populations were estimated using different approaches that included (ssGBLUP) or did not include genomic information (BLUP), with different pedigree structures. Different scenarios were tested, varying the proportion of young animals with unknown sires (0, 25, 50, 75, and 100%), and unknown maternal grandsires (0, 25, 50, 75, and 100%). The prediction accuracies and abilities were calculated. The estimated breeding value accuracies decreased as the proportion of unknown sires and maternal grandsires increased. The genomic estimated breeding value accuracy using the ssGBLUP was higher in scenarios with a lower proportion of known pedigree when compared to the BLUP methodology. The results obtained with the ssGBLUP showed that it is possible to obtain reliable direct and indirect predictions for young animals from commercial herds without pedigree structure. © 2023, The Author(s), under exclusive licence to Springer Nature B.V. |
Palabras claves : |
Beef cattle; Genomic prediction; Genomic selection; Pedigree uncertainty. |
Asunto categoría : |
L10 Genética y mejoramiento animal |
Marc : |
LEADER 02904naa a2200289 a 4500 001 1063978 005 2023-03-15 008 2023 bl uuuu u00u1 u #d 022 $a0049-4747 024 7 $a10.1007/s11250-023-03508-4$2DOI 100 1 $aLONDOÑO-GIL, M. 245 $aGenomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle.$h[electronic resource] 260 $c2023 500 $aArticle history: Received 28 April 2022, Accepted 11 February 2023, To be Published April 2023. -- Correspondence author: Cardona-Cifuentes, D.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, Brazil; email:daniel.cardona@unesp.br -- FUNDING: This work was supported by the São Paulo Research Foundation, FAPESP (grant number 2016/22751-6). -- Publisher: Springer Science and Business Media B.V. -- 520 $aThe aim of this work was to evaluate the impact of applying genomic information in pedigree uncertainty situations on genetic evaluations for growth- and cow productivity-related traits in Nelore commercial herds. Records for accumulated cow productivity (ACP) and adjusted weight at 450 days of age (W450) were used, as well as genotypes of registered and commercial herd animals, genotyped with the Clarifide Nelore 3.1 panel (~29,000 SNPs). The genetic values for commercial and registered populations were estimated using different approaches that included (ssGBLUP) or did not include genomic information (BLUP), with different pedigree structures. Different scenarios were tested, varying the proportion of young animals with unknown sires (0, 25, 50, 75, and 100%), and unknown maternal grandsires (0, 25, 50, 75, and 100%). The prediction accuracies and abilities were calculated. The estimated breeding value accuracies decreased as the proportion of unknown sires and maternal grandsires increased. The genomic estimated breeding value accuracy using the ssGBLUP was higher in scenarios with a lower proportion of known pedigree when compared to the BLUP methodology. The results obtained with the ssGBLUP showed that it is possible to obtain reliable direct and indirect predictions for young animals from commercial herds without pedigree structure. © 2023, The Author(s), under exclusive licence to Springer Nature B.V. 653 $aBeef cattle 653 $aGenomic prediction 653 $aGenomic selection 653 $aPedigree uncertainty 700 1 $aCARDONA-CIFUENTES, D. 700 1 $aESPIGOLAN, R. 700 1 $aPERIPOLLI, E. 700 1 $aLÔBO, R. B. 700 1 $aPEREIRA, A. S. C. 700 1 $aAGUILAR, I. 700 1 $aBALDI, F. 773 $tTropical Animal Health and Production, 2023, Volume 55, Issue 2, Article 95. doi: https://doi.org/10.1007/s11250-023-03508-4
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| Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha actual : |
21/02/2014 |
Actualizado : |
04/12/2018 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Circulación / Nivel : |
B - 1 |
Autor : |
PÉREZ, C. A.; DE BEER, Z. W.; ALTIER, N.; WINGFIELD, M. J.; BLANCHETTE, R. A. |
Afiliación : |
C. A. PÉREZ, Department of Plant Pathology, University of Minnesota, St Paul, USA; Departamento de Protección Vegetal, Universidad de la República, Paysandú, Uruguay.; Z. W. DE BEER, Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa; NORA ADRIANA ALTIER MANZINI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; M. J. WINGFIELD, Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa; R. A. BLANCHETTE, Department of Plant Pathology, University of Minnesota, St Paul, USA. |
Título : |
Discovery of the eucalypt pathogen Quambalaria eucalypti infecting a non-Eucalyptus host in Uruguay. |
Fecha de publicación : |
2008 |
Fuente / Imprenta : |
Australasian Plant Pathology, 2008, vol. 37, issue 6, pages 600-604. |
Serie : |
0815-3191 // Online ISSN 1448-6032 |
DOI : |
10.1071/AP08063 |
Idioma : |
Inglés |
Notas : |
Article history: Received 29 March 2008 // Accepted 28 July 2008. |
Contenido : |
ABSTRACT.
Quambalaria eucalypti, a serious pathogen of Eucalyptus, is believed to be native to Australia and introduced into various southern hemisphere countries, including Uruguay. In this study we record the discovery of Q. eucalypti causing leaf lesions on Myrceugenia glaucescens, a tree native to Uruguay. The identity of the pathogen was confirmed using DNA sequence comparisons of the internal transcribed spacer (ITS) region of the rDNA operon, as well as morphological characteristics. This is the first record of the pathogen on a host other than Eucalyptus. It clearly indicates a disturbing example of an alien invasive pathogen having undergone a host-shift from non-native Eucalyptus to a native tree in Uruguay.
© 2008 Australasian Plant Pathology Society. |
Palabras claves : |
HOST JUMP; MYRTACEAE; PLANT PATHOGENS. |
Asunto categoría : |
-- |
Marc : |
LEADER 01568naa a2200241 a 4500 001 1002918 005 2018-12-04 008 2008 bl uuuu u00u1 u #d 024 7 $a10.1071/AP08063$2DOI 100 1 $aPÉREZ, C. A. 245 $aDiscovery of the eucalypt pathogen Quambalaria eucalypti infecting a non-Eucalyptus host in Uruguay.$h[electronic resource] 260 $c2008 490 $a0815-3191 // Online ISSN 1448-6032 500 $aArticle history: Received 29 March 2008 // Accepted 28 July 2008. 520 $aABSTRACT. Quambalaria eucalypti, a serious pathogen of Eucalyptus, is believed to be native to Australia and introduced into various southern hemisphere countries, including Uruguay. In this study we record the discovery of Q. eucalypti causing leaf lesions on Myrceugenia glaucescens, a tree native to Uruguay. The identity of the pathogen was confirmed using DNA sequence comparisons of the internal transcribed spacer (ITS) region of the rDNA operon, as well as morphological characteristics. This is the first record of the pathogen on a host other than Eucalyptus. It clearly indicates a disturbing example of an alien invasive pathogen having undergone a host-shift from non-native Eucalyptus to a native tree in Uruguay. © 2008 Australasian Plant Pathology Society. 653 $aHOST JUMP 653 $aMYRTACEAE 653 $aPLANT PATHOGENS 700 1 $aDE BEER, Z. W. 700 1 $aALTIER, N. 700 1 $aWINGFIELD, M. J. 700 1 $aBLANCHETTE, R. A. 773 $tAustralasian Plant Pathology, 2008, vol. 37, issue 6, pages 600-604.
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